In Khartoum, armed security forces and Janjaweed militiamen clashed violently with protesters advocating for democratic reforms. The sit-in had drawn thousands of civilians who were demanding a transition to a civilian government after the ousting of long-time dictator Omar al-Bashir earlier in the year. The early morning raid on June 3 transformed what had been a peaceful demonstration into a scene of chaos and bloodshed. Eyewitness reports indicate that security personnel fired live ammunition into crowds, bulldozed the encampments, and engaged in violent repression against unarmed civilians. Hospitals were overwhelmed with casualties, as those attempting to flee were shot at indiscriminately.

International reaction was swift, with numerous global leaders expressing outrage. The incident drew sharp criticism from human rights organizations, which documented human rights violations. Amid protests, it became evident that many protest leaders were arrested or went into hiding, fearing for their safety. The violence triggered a civil discourse internationally about the legitimacy and brutality of the response from the Transitional Military Council leading the country.

The aftermath of the massacre left Sudan in a state of heightened insecurity and uncertainty. The struggle for power between military and civilian factions continued, illustrating deep divisions within Sudanese society. As protests resumed, more activists called for accountability and an end to military oversight in governance.